Latest News
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FamPlex: A Resource for Entity Recognition and Relationship Resolution of Human Protein Families and Complexes in Biomedical Text Mining
June 28, 2018
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Encoding Growth Factor Identity in the Temporal Dynamics of FOXO3 under the Combinatorial Control of ERK and AKT Kinases
May 31, 2018
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A High Content Screen in Macrophages Identifies Small Molecule Modulators of STING-IRF3 and NFkB Signaling
March 19, 2018
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Inflammatory but not Mitogenic Contexts Prime Synovial Fibroblasts for Compensatory Signaling Responses to p38 Inhibition
March 6, 2018
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Multiplexed Immunofluorescence Reveals Potential PD-1/PD-L1 Pathway Vulnerabilities in Craniopharyngioma
March 2, 2018
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Small-Molecule Screen Identifies De Novo Nucleotide Synthesis as a Vulnerability of Cells Lacking SIRT3
February 20, 2018
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Combination Cancer Therapy Can Confer Benefit via Patient-to-Patient Variability without Drug Additivity or Synergy
December 14, 2017
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The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations
November 24, 2017
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From Word Models to Executable Models of Signaling Networks Using Automated Assembly
November 24, 2017
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Quantification of sensitivity and resistance of breast cancer cell lines to anti-cancer drugs using GR metrics
November 7, 2017
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Zhang T, Inesta-Vaquera F, Niepel M, Zhang J, Ficarro SB, Machleidt T, Xie T, Marto JA, Kim N, Sim T, Laughlin JD, Park H, Lograsso PV, Patricelli M, Nomanbhoy TK, Sorger PK, Alessi DR, and Gray NS (2012). Discovery of Potent and Selective Covalent Inhibitors of JNK. Chem Biol 19(1), 140-154. PMC3270411 PMID: 22284361. Abstract […]
Luckert K, Gujral TS, Chan M, Joos TO, Sorger PK, Macbeath G, and Potz O (2012). A Dual Array-Based Approach to Assess the Abundance and Posttranslational Modification State of Signaling Proteins. Sci Signal 5(206), pl1. PMC3465074 PMID: 22234610. Abstract
A system-wide analysis of cell signaling requires detecting and quantifying many different proteins and their posttranslational […]
Aldridge BB, Gaudet S, Lauffenburger DA, and Sorger PK (2011). Lyapunov Exponents and Phase Diagrams Reveal Multi-Factorial Control over Trail-Induced Apoptosis. Mol Syst Biol 7, 553. PMID: 22108795. Abstract
Receptor-mediated apoptosis proceeds via two pathways: one requiring only a cascade of initiator and effector caspases (type I behavior) and the second requiring an initiator-effector caspase […]
Hagan RS, Manak MS, Buch HK, Meier MG, Meraldi P, Shah JV, and Sorger PK (2011). P31comet Acts to Ensure Timely Spindle Checkpoint Silencing Subsequent to Kinetochore Attachment. Mol Biol Cell PMID: 21965286. Abstract
The spindle assembly checkpoint links the onset of anaphase to completion of chromosome-microtubule attachment and is mediated by the binding of […]
Kleiman LB, Maiwald T, Conzelmann H, Lauffenburger DA, and Sorger PK (2011). Rapid Phospho-Turnover by Receptor Tyrosine Kinases Impacts Downstream Signaling and Drug Binding. Mol Cell 43, 723-737. PMC3222462. Abstract
Epidermal growth factor receptors (ErbB1-4) are oncogenic receptor tyrosine kinases (RTKs) that regulate diverse cellular processes. In this study, we combine measurement and mathematical modeling […]
Rines DR, Thomann D, Dorn JF, Goodwin P, and Sorger PK (2011). Live Cell Imaging of Yeast. Cold Spring Harb Protoc 2011 PMID: 21880825. Abstract
The development of cloning vectors for green fluorescent protein (GFP) and the simplicity of yeast reverse genetics allow straightforward labeling of yeast proteins in living cells. Budding and fission yeast […]
Saez-Rodriguez J, Alexopoulos L, Zhang M, Morris MK, Lauffenburger DA, and Sorger PK (2011). Comparing Signaling Networks between Normal and Transformed Hepatocytes Using Discrete Logical Models. Cancer Res PMC3207250 Abstract
Substantial effort in recent years has been devoted to constructing and analyzing large-scale gene and protein networks based on ‘omic data and literature mining. These […]
Millard BL, Niepel M, Menden MP, Muhlich JL, and Sorger PK (2011). Adaptive Informatics for Multifactorial and High-Content Biological Data. Nat Methods 8, 487-492. PMC3105758. Abstract
Whereas genomic data are universally machine-readable, data from imaging, multiplex biochemistry, flow cytometry and other cell- and tissue-based assays usually reside in loosely organized files of poorly documented provenance. […]
Spencer SL, and Sorger PK (2011). Measuring and Modeling Apoptosis in Single Cells. Cell 144, 926-939. PMC3087303 Abstract
Cell death plays an essential role in the development of tissues and organisms, the etiology of disease, and the responses of cells to therapeutic drugs. Here we review progress made over the last decade in using mathematical […]
Bachman JA, and Sorger P (2011). New Approaches to Modeling Complex Biochemistry. Nat Methods 8, 130-131. PMC3100653.
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