Latest News
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FamPlex: A Resource for Entity Recognition and Relationship Resolution of Human Protein Families and Complexes in Biomedical Text Mining
June 28, 2018
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Encoding Growth Factor Identity in the Temporal Dynamics of FOXO3 under the Combinatorial Control of ERK and AKT Kinases
May 31, 2018
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A High Content Screen in Macrophages Identifies Small Molecule Modulators of STING-IRF3 and NFkB Signaling
March 19, 2018
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Inflammatory but not Mitogenic Contexts Prime Synovial Fibroblasts for Compensatory Signaling Responses to p38 Inhibition
March 6, 2018
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Multiplexed Immunofluorescence Reveals Potential PD-1/PD-L1 Pathway Vulnerabilities in Craniopharyngioma
March 2, 2018
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Small-Molecule Screen Identifies De Novo Nucleotide Synthesis as a Vulnerability of Cells Lacking SIRT3
February 20, 2018
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Combination Cancer Therapy Can Confer Benefit via Patient-to-Patient Variability without Drug Additivity or Synergy
December 14, 2017
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The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations
November 24, 2017
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From Word Models to Executable Models of Signaling Networks Using Automated Assembly
November 24, 2017
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Quantification of sensitivity and resistance of breast cancer cell lines to anti-cancer drugs using GR metrics
November 7, 2017
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Thurber GM, Yang KS, Reiner T, Kohler RH, Sorger P, Mitchison T, and Weissleder R (2013). Single-Cell and Subcellular Pharmacokinetic Imaging Allows Insight into Drug Action in Vivo. Nat Commun 4(1504. PMC3579506 PMID: 23422672. Abstract
Pharmacokinetic analysis at the organ level provides insight into how drugs distribute throughout the body, but cannot explain how drugs […]
Lopez CF, Muhlich JL, Bachman JA, and Sorger PK (2013). Programming Biological Models in Python Using PySB. Mol Syst Biol 9(646. PMC3588907 PMID: 23423320. Abstract
Mathematical equations are fundamental to modeling biological networks, but as networks get large and revisions frequent, it becomes difficult to manage equations directly or to combine previously developed models. Multiple […]
Eydgahi H, Chen WW, Muhlich JL, Vitkup D, Tsitsiklis JN, and Sorger PK (2013). Properties of Cell Death Models Calibrated and Compared Using Bayesian Approaches. Mol Syst Biol 9(644). PMC3588908 PMID: 23385484. Abstract
Using models to simulate and analyze biological networks requires principled approaches to parameter estimation and model discrimination. We use Bayesian and Monte […]
Foijer F, Ditommaso T, Donati G, Hautaviita K, Xie SZ, Heath E, Smyth I, Watt FM, Sorger PK, and Bradley A (2013). Spindle Checkpoint Deficiency Is Tolerated by Murine Epidermal Cells but Not Hair Follicle Stem Cells. Proc Natl Acad Sci U S A PMC3581953 PMID: 23382243. Abstract
The spindle assembly checkpoint (SAC) ensures correct […]
Koytiger G, Kaushansky A, Gordus A, Rush J, Sorger PK, and Macbeath G (2013). Phosphotyrosine Signaling Proteins That Drive Oncogenesis Tend To Be Highly Interconnected. Mol Cell Proteomics PMC3650332 PMID: 23358503. Abstract
Mutation and over-expression of Receptor Tyrosine Kinases or the proteins they regulate serve as oncogenic drivers in diverse cancers. To better understand RTK […]
Sorger PK, and Schoeberl B (2012). An Expanding Role for Cell Biologists in Drug Discovery and Pharmacology. Mol Biol Cell 23(21), 4162-4164. PMC3484093 PMID: 23112228. Abstract
The profound challenges facing clinicians, who must prescribe drugs in the face of dramatic variability in response, and the pharmaceutical industry, which must develop new drugs despite ever-rising costs, […]
Lee MJ, Ye AS, Gardino AK, Heijink AM, Sorger PK, MacBeath G, and Yaffe MB (2012). Sequential Application of Anticancer Drugs Enhances Cell Death by Rewiring Apoptotic Signaling Networks. Cell 149(4), 780-794. PMC3501264 PMID: 22579283. Abstract
Crosstalk and complexity within signaling pathways and their perturbation by oncogenes limit component-by-component approaches to understanding human disease. Network […]
Kirouac DC, Saez-Rodriguez J, Swantek J, Burke JM, Lauffenburger DA, and Sorger PK (2012). Creating and Analyzing Pathway and Protein Interaction Compendia for Modelling Signal Transduction Networks. BMC Syst Biol 6(1), 29. PMC3436686 PMID: 22548703. Abstract
ABSTRACT: BACKGROUND: Understanding the information-processing capabilities of signal transduction networks, how those networks are disrupted in disease, and rationally […]
Gaudet S, Spencer SL, Chen WW, and Sorger PK (2012). Exploring the Contextual Sensitivity of Factors That Determine Cell-to-Cell Variability in Receptor-Mediated Apoptosis. PLoS Comput Biol 8(4), e1002482. PMC3343095 PMID: 22570596. Abstract
Stochastic fluctuations in gene expression give rise to cell-to-cell variability in protein levels which can potentially cause variability in cellular phenotype. For TRAIL […]
Liu Q, Kirubakaran S, Hur W, Niepel M, Westover K, Thoreen CC, Wang J, Ni J, Patricelli MP, Vogel K, Riddle S, Waller DL, Traynor R, Sanda T, Zhao Z, Kang SA, Zhao J, Look AT, Sorger PK, Sabatini DM, and Gray NS (2012). Kinome-Wide Selectivity Profiling of ATP-Competitive mTOR (Mammalian Target of Rapamycin) Inhibitors […]
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